{ "_id": "6a338f953efcd9bda439fc86", "Package": "picklerick", "Title": "Fast Single-Cell Format Conversion via SCX", "Version": "0.1.0", "Authors@R": "person(\"SCX Authors\", role = c(\"aut\", \"cre\"),\nemail = \"placeholder@example.com\")", "Description": "R bindings to the SCX streaming interop engine for\nsingle-cell genomics. Converts between H5Seurat, H5AD, and SCX\ninternal formats via a memory-bounded streaming pipeline.\nInspect file metadata without loading data into memory. No\nPython dependency.", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "SystemRequirements": "Cargo (rustup) >= 1.70", "Config/pak/sysreqs": "zlib1g-dev libclang-dev", "Repository": "https://omnibenchmark.r-universe.dev", "Date/Publication": "2026-06-16 21:49:08 UTC", "RemoteUrl": "https://github.com/btraven00/scx", "RemoteRef": "main", "RemoteSha": "0151c2f941fd808741ff5193ab8d35726fa0098a", "RemoteSubdir": "r/picklerick", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-16 22:58:00 UTC", "User": "root" }, "Author": "SCX Authors [aut, cre]", "Maintainer": "SCX Authors ", "MD5sum": "6cfc09221ee822280d553c119d10f62b", "_user": "omnibenchmark", "_type": "src", "_file": "picklerick_0.1.0.tar.gz", "_fileid": "62fcf63a8d35533cf482405996f7532dbd7ffd1c81a414783a101ec0df324ed7", "_filesize": 71762, "_sha256": "62fcf63a8d35533cf482405996f7532dbd7ffd1c81a414783a101ec0df324ed7", "_created": "2026-06-16T22:58:00.000Z", "_published": "2026-06-18T06:26:29.032Z", "_distro": "noble", "_jobs": [ { "job": 82067545987, "time": 326, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7681877479" }, { "job": 82067545738, "time": 310, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7681873212" }, { "job": 82067546188, "time": 321, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7681876225" }, { "job": 82067545958, "time": 318, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7681877011" }, { "job": 82067546036, "time": 163, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7681832438" }, { "job": 82067545733, "time": 557, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7681941455" }, { "job": 82067545812, "time": 245, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7681855612" }, { "job": 82067545943, "time": 357, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7681886263" }, { "job": 82067545517, "time": 376, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7681785059" }, { "job": 82067545208, "time": 266, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 82067545216, "time": 152, "config": "windows-devel", "r": "4.7.0", "check": "FAIL", "artifact": "" }, { "job": 82067545218, "time": 135, "config": "windows-oldrel", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 82067545230, "time": 138, "config": "windows-release", "r": "4.6.0", "check": "FAIL", "artifact": "" } ], "_buildurl": "https://github.com/r-universe/omnibenchmark/actions/runs/27653445332", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/btraven00/scx", "_commit": { "id": "0151c2f941fd808741ff5193ab8d35726fa0098a", "author": "ben ", "committer": "btraven <128150520+btraven00@users.noreply.github.com>", "message": "test(scx-cli): cover convert --compress over committed fixture\n\nThe Codecov patch flagged the CLI compression wiring in scx-cli/src/main.rs as\nuncovered: the existing convert integration tests rely on gitignored golden\nfixtures and are skipped in CI.\n\nAdd tests/compress.rs driving `scx convert --compress` through the committed\ntests/fixtures/norman_subset.h5ad (which CI does have). Covers the new logic:\nthe --compress arg + destructure, the h5ad create_compressed branch, the\n\"ignored for .h5seurat\" warn branch, an explicit level, and the H5Ad / H5Seurat\n/ NpyDir convert dispatch arms (the latter two reached by chaining\nh5ad->h5seurat and snapshot->npy-dir from the same fixture). Asserts the gzip\noutput is smaller and reads back via `scx inspect`.\n\nThe TenxH5 / ScxH5 dispatch arms stay uncovered — those are read-only input\nformats scx cannot generate and have no committed fixture.\n", "time": 1781646548 }, "_maintainer": { "name": "SCX Authors", "email": "placeholder@example.com" }, "_registered": true, "_dependencies": [ { "package": "methods", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "SingleCellExperiment", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "HDF5Array", "role": "Suggests" }, { "package": "rhdf5", "role": "Suggests" }, { "package": "Seurat", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "btraven00", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-13", "n": 25 }, { "week": "2026-14", "n": 10 }, { 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